Index

A

accuracy (fredtools.braggPeak property) addExpMarginToMask() (in module fredtools) addGaussMarginToMask() (in module fredtools)

addMarginToMask() (in module fredtools) anonymizeDicoms() (in module fredtools) arr() (in module fredtools)

B

beamModel (class in fredtools) bortCut (fredtools.braggPeak property) bortfeldFit (fredtools.braggPeak property) bortfeldFitParam (fredtools.braggPeak property)

bp (fredtools.braggPeak property) bpBort (fredtools.braggPeak property) bpInterp (fredtools.braggPeak property) braggPeak (class in fredtools)

C

calcContours() (in module fredtools.ProtonOptimisation.preoptimizer) calcGammaIndex() (in module fredtools) calcRaysVectors() (in module fredtools) calcWETfromWER() (in module fredtools.ProtonOptimisation.preoptimizer) checkDicomsUID() (in module fredtools) checkFREDVersion() (in module fredtools) compare() (fredtools.ImgAnalyse.dvhAnalyse.DVH method) compareImg() (in module fredtools) compareImgFoR() (in module fredtools) configureLogging() (in module fredtools)

convertCTtoWER() (in module fredtools.ProtonOptimisation.preoptimizer) convertMHDtoDoubleFiles() (in module fredtools) convertMHDtoSingleFile() (in module fredtools) convertRayTargetToIsoPlane() (in module fredtools.ProtonOptimisation.preoptimizer) createBoxMask() (in module fredtools) createConeMask() (in module fredtools) createCylinderMask() (in module fredtools) createEllipseMask() (in module fredtools) createImg() (in module fredtools) creationTime (fredtools.beamModel property) cropImgToMask() (in module fredtools)

D

displayImageInfo() (in module fredtools) displayInfo (fredtools.braggPeak property) displayInfo() (fredtools.beamModel method) (fredtools.ImgAnalyse.dvhAnalyse.DVH method) divideImg() (in module fredtools)

doseConstraint() (fredtools.ImgAnalyse.dvhAnalyse.DVH method) doseDiffCenters (fredtools.ImgAnalyse.dvhAnalyse.DVH property) doseDiffEdges (fredtools.ImgAnalyse.dvhAnalyse.DVH property) doseLevels (fredtools.ImgAnalyse.dvhAnalyse.DVH property) dosePrescribed (fredtools.ImgAnalyse.dvhAnalyse.DVH property) DVH (class in fredtools.ImgAnalyse.dvhAnalyse)

E

energyModel (fredtools.beamModel property)

F

findSpots() (in module fredtools) fitLandau() (in module fredtools) fitLandauGauss() (in module fredtools) fitSigmaSquaredModel() (in module fredtools) fitSpotImg() (in module fredtools)

fitSpotProfile() (in module fredtools) fitVavilov() (in module fredtools) floatingToBinaryMask() (in module fredtools) fromPickle() (fredtools.beamModel class method) fromYAML() (fredtools.beamModel method) fwhm2sigma() (in module fredtools)

G

generateIsoLayers() (in module fredtools.ProtonOptimisation.preoptimizer) getCPUNo() (in module fredtools) getCT() (in module fredtools) getCumSum() (in module fredtools) getDBort() (fredtools.braggPeak method) getDFOBort() (fredtools.braggPeak method) getDFOInterp() (fredtools.braggPeak method) getDicomTypeName() (in module fredtools) getDInterp() (fredtools.braggPeak method) getDVHMask() (in module fredtools) getDVHStruct() (in module fredtools) getExtent() (in module fredtools) getExternalName() (in module fredtools) getExtMpl() (in module fredtools) getFREDVersion() (in module fredtools) getFREDVersions() (in module fredtools) getGateParams() (fredtools.beamModel method) getGIcmap() (in module fredtools) getGIstat() (in module fredtools) getHistogram() (in module fredtools) getImageCenter() (in module fredtools) getImgBEV() (in module fredtools) getInmFREDBaseImg() (in module fredtools) getInmFREDInfo() (in module fredtools) getInmFREDSparse() (in module fredtools) getInteg() (in module fredtools) getIntegral() (in module fredtools)

getLineFromFile() (in module fredtools) getLogger() (in module fredtools) getMassCenter() (in module fredtools) getMaxPosition() (in module fredtools) getMinPosition() (in module fredtools) getPET() (in module fredtools) getPoint() (in module fredtools) getProfile() (in module fredtools) getProfilePoints() (in module fredtools) getRBort() (fredtools.braggPeak method) getRD() (in module fredtools) getRDFileNameForFieldNumber() (in module fredtools) getRInterp() (fredtools.braggPeak method) getRNFields() (in module fredtools) getRNInfo() (in module fredtools) getRNIsocenter() (in module fredtools) getRNMachineName() (in module fredtools) getRNSpots() (in module fredtools) getRSInfo() (in module fredtools) getSigma() (fredtools.beamModel method) getSize() (in module fredtools) getSlice() (in module fredtools) getStatistics() (in module fredtools) getVoxelCentres() (in module fredtools) getVoxelEdges() (in module fredtools) getVoxelPhysicalPoints() (in module fredtools) getWBort() (fredtools.braggPeak method) getWInterp() (fredtools.braggPeak method)

I

img2vec() (in module fredtools) inmSumImg() (in module fredtools) inmSumVec() (in module fredtools) interpolateBeamModel() (fredtools.beamModel method) (in module fredtools)

interpolation (fredtools.beamModel property) (fredtools.braggPeak property) isPointInside() (in module fredtools) ITK2SITK() (in module fredtools)

M

machineModel (fredtools.beamModel property) machineName (fredtools.beamModel property) machineVendor (fredtools.beamModel property) mapStructToImg() (in module fredtools) materials (fredtools.beamModel property) max (fredtools.ImgAnalyse.dvhAnalyse.DVH property) maximumImg() (in module fredtools)

mean (fredtools.ImgAnalyse.dvhAnalyse.DVH property) meanImg() (in module fredtools) median (fredtools.ImgAnalyse.dvhAnalyse.DVH property) mergePDF() (in module fredtools) min (fredtools.ImgAnalyse.dvhAnalyse.DVH property) minimumImg() (in module fredtools) mouseButtonPressEvent() (fredtools.showSlices method)

N

name (fredtools.beamModel property)

nomEnergies (fredtools.beamModel property)

O

offset (fredtools.braggPeak property) optimiseBeamPositions() (in module fredtools.ProtonOptimisation.optimiseBeamPositions) optimiseBeamPositionsConcentric() (in module fredtools.ProtonOptimisation.optimiseBeamPositions)

optimiseBeamPositionsDelaunay() (in module fredtools.ProtonOptimisation.optimiseBeamPositions) optimiseBeamPositionsHexagonal() (in module fredtools.ProtonOptimisation.optimiseBeamPositions) optimiseBeamPositionsRegular() (in module fredtools.ProtonOptimisation.optimiseBeamPositions) overwriteCTPhysicalProperties() (in module fredtools)

P

pdfLandau() (in module fredtools) pdfLandauGauss() (in module fredtools) pdfVavilov() (in module fredtools)

plot (fredtools.braggPeak property) plot() (fredtools.ImgAnalyse.dvhAnalyse.DVH method) pos() (in module fredtools)

R

radiationType (fredtools.beamModel property) readBeamModel() (in module fredtools) readFREDStat() (in module fredtools) readGATE_HITSActor() (in module fredtools) readGATE_PSActor() (in module fredtools) readGATEStat() (in module fredtools) readMHD() (in module fredtools)

readOPD() (in module fredtools) readOPG() (in module fredtools) removeArtist() (fredtools.showSlices method) replotPointLines() (fredtools.showSlices method) resampleImg() (in module fredtools) rsModel (fredtools.beamModel property) runFRED() (in module fredtools)

S

scrollEvent() (fredtools.showSlices method) scrollEventShiftPress() (fredtools.showSlices method) scrollEventShiftRelease() (fredtools.showSlices method) setFieldsFolderStruct() (in module fredtools) setIdentityDirection() (in module fredtools) setNaNImg() (in module fredtools) setValueMask() (in module fredtools) showSlice() (in module fredtools) showSliceAX0() (fredtools.showSlices method) showSliceAX1() (fredtools.showSlices method) showSliceAX2() (fredtools.showSlices method) showSlices (class in fredtools)

sigma2fwhm() (in module fredtools) siteName (fredtools.beamModel property) SITK2ITK() (in module fredtools) sortDicoms() (in module fredtools) sourceToAxisDistance (fredtools.beamModel property) splineOrder (fredtools.beamModel property) (fredtools.braggPeak property) spreadingDeviceDistance (fredtools.beamModel property) statistic() (fredtools.ImgAnalyse.dvhAnalyse.DVH method) stdDev (fredtools.ImgAnalyse.dvhAnalyse.DVH property) sumImg() (in module fredtools) sumVectorImg() (in module fredtools)

T

toPickle() (fredtools.beamModel method) transformContinuousIndexToPhysicalPoint() (in module fredtools)

transformIndexToPhysicalPoint() (in module fredtools) transformPhysicalPointToContinuousIndex() (in module fredtools) transformPhysicalPointToIndex() (in module fredtools)

V

vec() (in module fredtools) volume (fredtools.ImgAnalyse.dvhAnalyse.DVH property) volumeConstraint() (fredtools.ImgAnalyse.dvhAnalyse.DVH method)

volumeCumAbs (fredtools.ImgAnalyse.dvhAnalyse.DVH property) volumeCumRel (fredtools.ImgAnalyse.dvhAnalyse.DVH property) volumeDiffAbs (fredtools.ImgAnalyse.dvhAnalyse.DVH property) volumeDiffRel (fredtools.ImgAnalyse.dvhAnalyse.DVH property)

W

wrapAngle() (in module fredtools)

writeBeamModel() (in module fredtools) writeMHD() (in module fredtools)